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The population of eastern Africa was at the center of the human dispersals following the first appearance of Homo sapiens some 150kya, when anatomically modern humans spread into south Asia, eastern Africa, and the Middle East. The earliest evidence of Africans is for an age of ~60kya for the early forms of the genus Homo, which supported a model of a single dispersal event across Africa, and a subsequent split to form archaic and modern humans [ 30, 31 ]. However, recent genetic and archaeological evidence has challenged this model and suggests a more complex picture. For example, Sankararaman et al. [ 32 ] reported that present-day Africans descend primarily from one of two ancestral populations, the eastern African Mbuti, which provided the genetic foundation for those of the other regions, or the western African San people. San and Mbuti diverged ~300kya and also split from the ancestors of all other humans after the global dispersal out of Africa. However, Sankararaman et al. [ 32 ] also suggested that recent admixture took place between Mbuti and western Europeans, as well as Africans and Europeans. This is consistent with the admixture of African populations into the European gene pool, and the latter into the modern Asian population (poster presentation abstract).
In favor of an out of Africa origin for modern humans, some have argued that, after the mass extinction of hominins in Africa [ 1 ], all of the components of the modern human genome would have been inherited from a single recent common ancestor in Africa about 200kya. On the other hand, there is some disagreement about whether early African ancestors and Neandertals were distinct species or part of a clade of Homo species with a common origin about 2Myr ago ( 2 million years ago) in eastern Africa [ 30, 31 ]. Analyzing genome-wide genetic polymorphisms in African populations, a recent study concluded that Neandertals were nested within a diverse set of African populations and that the Neandertals were genetically similar to the modern humans of Africa [ 32 ]. This was based on analysis of the biallelic and trinucleotide repeat genomic sites that remained polymorphic after the most recent common ancestor of all humans shared a common diploid genome. A separate analysis of the mitochondrial DNA (mtDNA) genome showed that Neandertal mtDNA was always more similar to the human mitochondrial genome than was human mtDNA was to that of the Neandertal. While the overall similarity between Neandertal and human mtDNA was 82%, the human specific sequences were an average of 95% similar to Neandertal, indicating that they were not co-diverged from a common ancestor. However, the same analysis suggested that Neandertal and human genomes diverged from a common ancestor ~650kya
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